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Publications
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Machine learning models predict long COVID outcomes based on baseline clinical and immunologic factors
Author Collaboration IN, Doni Jayavelu N, Samaha H, Wimalasena ST, Hoch A, Gygi JP, Gabernet G, Ozonoff A, Liu S, Milliren CE, Levy O, Baden LR, Melamed E, Ehrlich LI, McComsey GA, Sekaly RP, Cairns CB, Haddad EK, Schaenman J, Shaw AC, Hafler DA, Montgomery RR, Corry DB, Kheradmand F, Atkinson MA, Brakenridge SC, Agudelo Higuit NI, Metcalf JP, Hough CL, Messer WB, Pulendran B, Nadeau KC, Davis MM, Gen LN, Fernandez Sesma A, Simon V, Krammer F, Kraft M, Bime C, Calfee CS, Erle DJ, Langelier CR, Tipan PG, Rogers JE, Siles N, Geltman JN, Hurley KC, Rousseau JF, Wylie D, Maguire C, Rogers A Communications Medicine 2026 Dec 6 -
An evaluation of ambient artificial intelligence scribes at two academic medical centers
Franklin J, Chu L, McDonald SA, Turer RW, Webb J, Steitz BD, Yi H, Chen Q, McCoy AB, Nall C, Chen C, Rousseau JF, Lehmann CU, Willett DL, Kumah-Crystal YA, Mize DE Discover Artificial Intelligence 2026 Dec 6 -
Author Correction: Machine learning models predict long COVID outcomes based on baseline clinical and immunologic factors (Communications Medicine, (2026), 6, 1, (1), 10.1038/s43856-025-01230-w)
Author Collaboration IN, Doni Jayavelu N, Samaha H, Wimalasena ST, Hoch A, Gygi JP, Gabernet G, Ozonoff A, Liu S, Milliren CE, Levy O, Baden LR, Melamed E, Ehrlich LI, McComsey GA, Sekaly RP, Cairns CB, Haddad EK, Schaenman J, Shaw AC, Hafler DA, Montgomery RR, Corry DB, Kheradmand F, Atkinson MA, Brakenridge SC, Agudelo Higuit NI, Metcalf JP, Hough CL, Messer WB, Pulendran B, Nadeau KC, Davis MM, Geng LN, Fernandez Sesma A, Simon V, Krammer F, Kraft M, Bime C, Calfee CS, Erle DJ, Langelier CR, Tipan PG, Rogers JE, Siles N, Geltman JN, Hurley KC, Rousseau JF, Wylie D, Maguire C, Rogers A Communications Medicine 2026 Dec 6 -
The effect of cumulative trauma load on suicide risk and thoughts in trauma-exposed youth over two years
Metts A, Creech SK, Leri J, Dodd CG, Newport DJ, Shahidullah JD, Rousseau JF, Foshee KL, Richmond RE, Garrett AS, Wagner KD, Nemeroff CB Journal of affective disorders 2026 Nov 413 -
Virus reactivation in acute and long COVID-19
Author Collaboration IN, Maguire C, Chen J, Rouphael N, Morse BA, Hoch A, Pickering H, Phan HV, Glascock A, Chu V, Dandekar R, Tipan PG, Rogers JE, Siles N, Geltman JN, Hurley KC, Rousseau J, Wylie D, Anderson ML, Borresen B, Guirgis FW, Oberhaus J, Moldawer L, Manning BR, Ungaro RF, Sierra B, Hughes T, Wilson CC, Molzahn A, Francisco D, Conway M, Kimura H, Schunk R, Erickson H, Mosier J, Bime C, Brown BR, Drevets DA, Booth JL, Sinko LA, Nelson E, Song LZ, Corry DB, Xu L, Wang K, Grubaugh ND, Rothman J, Brito A, Esserman D, Gabernet G, Rogers A Nature 2026 Aug 656 700-711 -
CPGPrompt: translating clinical guidelines into large language model-executable decision support
Deng R, Martin G, Wang T, Zhang G, Liu Y, Weng C, Wang Y, Rousseau JF, Peng Y Journal of the American Medical Informatics Association 2026 Apr 33 855-862 -
Empiric azithromycin alters the upper respiratory microbiome and resistome without anti-inflammatory benefit in COVID-19
Author Collaboration IN, Glascock A, Maguire C, Phan HV, Lydon EC, Schaenman J, Calfee CS, Melamed E, Greenland J, Corry DB, Kheradmand F, Baden LR, Sekaly R, McComsey GA, Haddad EK, Cairns CB, Geng LN, Pulendran B, Fernandez-Sesma A, Simon V, Metcalf JP, Agudelo Higuita NI, Messer WB, Davis MM, Nadeau KC, Kraft M, Bime C, Erle DJ, Atkinson MA, Brakenridge SC, Ehrlich LI, Montgomery RR, Shaw AC, Hough CL, Hafler DA, Augustine AD, Becker PM, Peters B, Ozonoff A, Hoch A, Kim-Schulze S, Krammer F, Bosinger S, Eckalbar W, Altman MC, Wilson M, Guan L, Maecker H, Steen H, Tipan PG, Rousseau JF Nature microbiology 2026 Apr 11 1100-1112 -
Use and Implications of the Fracture Risk Assessment Tool in Primary Hyperparathyroidism
Sant VR, ElNakieb Y, Rousseau JF, Liu YL, Rubin CD, Maalouf NM JAMA Network Open 2026 Mar 9 -
Crossover Evaluation of Two Ambient AI Scribe Tools in the Emergency Department
Webb J, Chu L, Turer RW, Chen C, Rousseau JF, Salter A, Courtney DM, Higashi RT, Guzman N, Chapman WW, Willett DW, McDonald SA Applied Clinical Informatics 2026 Jan 17 118-126 -
Multimodal passive smartphone sensing in older adults: a guide for clinical scientists based upon an ongoing cohort study
Shen Y, Huang M, Park JH, Benge JF, Rousseau JF, Lester-Smith RA, Thomaz E Innovation in Aging 2026 10 -
Exploring resource profiles among trauma exposed youth: An identity-focused, cultural, and person-centered approach
Onyeka O, Cheng JS, Sanei S, Clark SL, Pinciotti CM, Guzick AG, Storch EA, Stewart S, Sandoval JF, Taylor L, Riddle D, Garza C, Liberzon I, Rousseau J, Shahidullah JD, Newport DJ, Wagner KD, Nemeroff C Journal of affective disorders 2026 Jan 393 -
History of interpersonal trauma exposure is a robust risk factor for alcohol and substance use disorders during adolescence
Leri J, Cisler JM, Clark SL, Garrett A, Taylor L, Loganathan M, Trinh A, Shahidullah JD, Rousseau JF, Rathouz PJ, Newport DJ, Wagner KD, Nemeroff CB Journal of Psychiatric Research 2026 Jan 192 302-311 -
Validity of the PHQ-9A as a self-report screener for major depressive disorder in youth ages 10–12 years
Stewart SM, Sanei S, Abu-Samaha A, Emslie GJ, Rathouz PJ, Belford A, Garrett A, Shotwell J, Taylor LK, Rousseau JF, Shahidullah JD, Newport J, Wagner KD, Nemeroff CB Journal of affective disorders 2026 Jan 392 -
SDoH-GPT: using large language models to extract social determinants of health
Consoli B, Wang H, Wu X, Wang S, Zhao X, Wang Y, Rousseau J, Hartvigsen T, Shen L, Wu H, Peng Y, Long Q, Chen T, Ding Y Journal of the American Medical Informatics Association 2026 Jan 33 67-78 -
Dissecting clinical features of COVID-19 in a cohort of 21,312 acute care patients
Maguire C, Soloveichik E, Blinchevsky N, Miller J, Morrison R, Busch J, Michael Brode W, Wylie D, Rousseau J, Melamed E Communications Medicine 2025 Dec 5 -
Circulating endothelial signatures correlate with worse outcomes in COVID-19, respiratory failure and ARDS
Author Collaboration IN, Author Collaboration CS, Costa Monteiro AC, Pickering H, Sarma A, Taylor CS, Jenkins MM, Hsu FM, Nadel B, Levy O, Baden LR, Melamed E, Ehrlich LI, McComsey GA, Sekaly RP, Cairns CB, Haddad EK, Shaw AC, Hafler DA, Montgomery RR, Corry DB, Kheradmand F, Atkinson MA, Brakenridge SC, Higuita NI, Metcalf JP, Hough CL, Messer WB, Pulendran B, Nadeau KC, Davis MM, Geng LN, Fernandez-Sesma A, Simon V, Krammer F, Kraft M, Bime C, Calfee CS, Erle DJ, Bosinger S, Eckalbar W, Maecker H, Rahman A, Guan L, Peters B, Kleinstein SH, Augustine AD, Diray-Arce J, Becker PM, Rouphael N, Tipan PG, Rousseau JF Critical Care 2025 Dec 29 -
Corrigendum to “Clinical characteristics and longitudinal associations with obsessive-compulsive disorder in youth exposed to trauma” [J Mood Anxiety Disord 10C (2025) 100117] (Journal of Mood and Anxiety Disorders (2025) 10, (S2950004425000148), (10.1016/j.xjmad.2025.100117))
Pinciotti CM, Rathouz PJ, Guzick AG, Shahidullah JD, Bivins EJ, Riddle DB, Onyeka O“, Storch EA, Goodman WK, Franco K, Rousseau JF, Newport DJ, Wagner KD, Nemeroff CB Journal of Mood and Anxiety Disorders 2025 Dec 12 -
Leveraging long context in retrieval augmented language models for medical question answering
Zhang G, Xu Z, Jin Q, Chen F, Fang Y, Liu Y, Rousseau JF, Xu Z, Lu Z, Weng C, Peng Y npj Digital Medicine 2025 Dec 8 -
SARS-CoV-2 humoral immune responses in convalescent individuals over 12 months reveal severity-dependent antibody dynamics
Siles Alvarado N, Schuler M, Maguire C, Amengor DA, Nguyen AW, Wilen RE, Rogers J, Bazzi S, Caslin B, DiPasquale C, Abigania M, Olson E, Creaturo J, Hurley K, Triplett TA, Rousseau JF, Strakowski SM, Wylie D, Maynard JA, Ehrlich LI, Melamed E Communications Medicine 2025 Dec 5 -
A foundation model for human-AI collaboration in medical literature mining
Wang Z, Cao L, Jin Q, Chan J, Wan N, Afzali B, Cho HJ, Choi CI, Emamverdi M, Gill MK, Kim SH, Li Y, Liu Y, Luo Y, Ong H, Rousseau JF, Sheikh I, Wei JJ, Xu Z, Zallek CM, Kim K, Peng Y, Lu Z, Sun J Nature communications 2025 Dec 16 -
Host-microbe multiomic profiling identifies distinct COVID-19 immune dysregulation in solid organ transplant recipients
Author Collaboration IN, Pickering H, Schaenman J, Phan HV, Maguire C, Tsitsiklis A, Rouphael N, Higuita NI, Atkinson MA, Brakenridge S, Fung M, Messer W, Seyfert-Margolis V, Rahman A, Wong K, Michelotti G, Hutton SR, Overton JA, Nagle C, Sheidy J, Schearer P, Ulring K, Mege N, Rogowski B, Tegos GP, McLin R, Furukawa S, Bell MR, Semenza NC, Croen B, Martens M, Smith CM, Simmons B, Goonewardene IM, Kim JN, Powell DL, Melnyk N, Lin E, Lee E, Edwards C, Joyner D, Woloszczuk K, Connors J, Cusimano G, Bernui M, Kutzler MA, Haddad EK, Cairns CB, Ribeiro SP, Rogers A, Rousseau JF Nature communications 2025 Dec 16 -
Advancing delirium detection through the Open Health Natural Language Processing Consortium and the Evolve to Next-Gen Accrual to Clinical Trials Network
Fu S, Kwak MJ, Ahn J, Yue Z, Ranganath S, Applegate JR, Wen A, Wang L, Li C, Morris M, Toth KM, Girard TD, Osborne JD, Kennedy RE, Garduno-Rapp NE, Reeder P, Rousseau JF, Yan C, Chen Y, Patel MB, Murphy TJ, Malin BA, Park CM, Jia H, Pagali S, Palmer AK, Sauver JS, Sohn S, Bernstam EV, Visweswaran S, Wang Y, Liu H Journals of Gerontology - Series A Biological Sciences and Medical Sciences 2025 Dec 80 -
Minimalistic transcriptomic signatures permit accurate early prediction of COVID-19 mortality
Author Collaboration IN, Author Collaboration CC, Author Collaboration EC, Narendra R, Lydon EC, Van Phan H, Spottiswoode N, Neyton LP, Diray-Arce J, Becker PM, Kim-Schulze S, Hoch A, Pickering H, van Zalm P, Cairns CB, Altman MC, Augustine AD, Bosinger S, Eckalbar W, Guan L, Jayavelu ND, Kleinstein SH, Krammer F, Maecker HT, Ozonoff A, Peters B, Rouphael N, Montgomery RR, Reed E, Schaenman J, Steen H, Levy O, Haller SC, Erle D, Hendrickson CM, Krummel MF, Matthay MA, Woodruff P, Haddad EK, Calfee CS, Langelier CR, Reed EF, Salehi-Rad R, Rivera AM, Sen S, Elashoff D, Ward DC, Brook J, Ramires-Sanchez E, Llamas M, Perdomo C, Rousseau JF, Rogers A JCI Insight 2025 Nov 10 -
Factors associated with interpersonal retraumatization in children and adolescents: A prospective study
Jeevarajan JR, Newman S, Claassen CA, Theodorou A, Guerra M, Madia ND, Proch L, Olemgbe C, Siddiqui S, Mohammadi C, Farmer D, Rosenberg A, Ladd S, Ahumada N, Newport DJ, Shahidullah JD, Shotwell J, Richmond R, Nguyen M, Dieste S, Rush AJ, Rousseau JF, Wagner KD, Nemeroff CB Psychiatry research 2025 Nov 353 -
Type 2 immune responses are associated with less severe COVID-19 in a hospitalized cohort
Author Collaboration IN, Altman MC, Jayavelu ND, Qi J, Milliren CE, Ozonoff A, Liu S, Levy O, Baden LR, Melamed E, McComsey GA, Cairns CB, Schaenman J, Shaw AC, Hafler DA, Corry DB, Kheradmand F, Atkinson MA, Brakenridge SC, Agudelo Higuita NI, Metcalf JP, Hough CL, Messer WB, Pulendran B, Nadeau KC, Davis MM, Geng LN, Sesma AF, Simon V, Krammer F, Bime C, Calfee CS, Bosinger SE, Eckalbar W, Steen H, Maecker HT, Augustine AD, Diray-Arce J, Haddad EK, Sekaly RP, Kraft M, Woodruff PG, Erle DJ, Ehrlich LI, Montgomery RR, Becker PM, Fourati S, Holland SM, Rosen LB, Lee S, Rousseau JF Journal of Allergy and Clinical Immunology: Global 2025 Nov 4 -
Accuracy of Large Language Models to Identify Stroke Subtypes Within Unstructured Electronic Health Record Data
Owens D, Nguyen DQ, Dohopolski M, Rousseau JF, Peterson ED, Navar AM Stroke 2025 Oct 56 2966-2975 -
The structure of posttraumatic stress symptoms in youth with and without obsessive-compulsive disorder: New insights using factor and network analysis
Pinciotti CM, Cervin M, Drummond KN, Shahidullah JD, Rousseau JF, Dodd CG, Ramirez M, Hettema JM, Richmond R, Taylor LK, Monnat L, Proch L, Teng F, Goodman WK, Storch EA, Guzick AG, Newport DJ, Wagner KD, Nemeroff CB Journal of Mood and Anxiety Disorders 2025 Sep 11 -
Development and validation of natural language processing algorithms in the national ENACT network
Wang Y, Hilsman J, Li C, Morris M, Heider PM, Fu S, Kwak MJ, Wen A, Applegate JR, Wang L, Bernstam E, Liu H, Chang J, Harris DR, Corbeau A, Henderson D, Osborne J, Kennedy RE, Garduno-Rapp NE, Rousseau JF, Yan C, Chen Y, Patel MB, Murphy TJ, Malin BA, Park CM, Fan JW, Sohn S, Pagali S, Peng Y, Pathak A, Wu Y, Xia Z, Loguercio S, Reis SE, Visweswaran S Journal of Clinical and Translational Science 2025 Aug 9 -
Clinical characteristics and longitudinal associations with obsessive-compulsive disorder in youth exposed to trauma
Pinciotti CM, Rathouz PJ, Guzick AG, Shahidullah JD, Bivins EJ, Riddle DB, Onyeka O“, Storch EA, Goodman WK, Franco K, Rousseau JF, Newport DJ, Wagner KD, Nemeroff CB Journal of Mood and Anxiety Disorders 2025 Jun 10 -
Longitudinal Effects of Negative Ethnic-Racial Identity Affect on Internalizing Symptoms in Youth of Latiné Background Exposed to Interpersonal Trauma
Stewart SM, Aksan N, Bancroft A, Shahidullah JD, Krantz SM, Guerra M, Sandoval J, Garza C, Viana AG, Morgan M, DeVargas C, Rousseau JF, Newport DJ, Wagner KD, Nemeroff CB Journal of Clinical Psychiatry 2025 Jun 86 -
From GPT to DeepSeek: Significant gaps remain in realizing AI in healthcare
Peng Y, Malin BA, Rousseau JF, Wang Y, Xu Z, Xu X, Weng C, Bian J Journal of Biomedical Informatics 2025 Mar 163 -
Short-Term Safety and Effectiveness for Tenecteplase and Alteplase in Acute Ischemic Stroke
Rousseau JF, Weber JM, Alhanti B, Saver JL, Messé SR, Schwamm LH, Fonarow GC, Sheth KN, Smith EE, Mullen MT, Silva GS, Grory BM, Xian Y, Warach SJ JAMA Network Open 2025 Mar 8 e250548 -
Creating a collaborative culture of learning within a network of community mental health early psychosis programs in Texas
Lopez MA, Reznik SJ, Klodnick VV, Cohen D, Myers N, Rousseau JF, Aksan N, de Oliveira E, Strakowski SM Schizophrenia Research 2025 Feb 276 1-7 -
Deep Learning-Based Detection of Cognitive Impairment from Passive Smartphone Sensing with Routine-Aware Augmentation and Demographic Personalization
Shen Y, Park JH, Huang M, Benge JF, Rousseau JF, Lester-Smith RA, Thomaz E 2025 -
Ambient technology in epilepsy clinical practice
Kakwan H, Rousseau JF, Moura LM, Sheikh IS Epilepsia Open 2025 -
Latent Classes of Adolescent Trauma Exposure, Posttraumatic Stress Disorder Symptoms, and Substance Use Predict Clinical Diagnoses at 12-Month Follow-Up
Leri J, Cisler JM, Clark SL, Dodd CG, Siddiqui S, Taylor L, Ayala A, Stewart S, Richmond R, Shahidullah JD, Rousseau JF, Hettema JM, Newport DJ, Wagner KD, Nemeroff CB Chronic Stress 2025 Jan 9 -
Hidden flaws behind expert-level accuracy of multimodal GPT-4 vision in medicine
Jin Q, Chen F, Zhou Y, Xu Z, Cheung JM, Chen R, Summers RM, Rousseau JF, Ni P, Landsman MJ, Baxter SL, Al’Aref SJ, Li Y, Chen A, Brejt JA, Chiang MF, Peng Y, Lu Z npj Digital Medicine 2024 Dec 7 -
IgM N-glycosylation correlates with COVID-19 severity and rate of complement deposition
Author Collaboration ID, Author Collaboration IS, Author Collaboration IC, Author Collaboration IC, Author Collaboration IN, Author Collaboration IS, Author Collaboration C&, Haslund-Gourley BS, Woloszczuk K, Hou J, Connors J, Cusimano G, Bell M, Taramangalam B, Fourati S, Mege N, Bernui M, Altman MC, Krammer F, van Bakel H, Maecker HT, Rouphael N, Diray-Arce J, Wigdah B, Kutzler MA, Cairns CB, Haddad EK, Comunale MA, Ozonoff A, Ehrlich LI, Melamed E, Sesma AF, Simon V, Pulendran B, Nadeau KC, Davis MM, McCoey GA, Sekaly R, Baden LR, Levy O, Schaenman J, Reed EF, Shaw AC, Hafler DA, Montgomery RR, Kleinstein SH, Becker PM, Augustine AD, Calfee CS, Erle DJ, Debakey ME, Corry DB, Kheradmand F, Atkinson MA, Brakenridge SC, Rousseau JF, Rogers A Nature communications 2024 Dec 15 -
Beyond bias: Aggregate approaches to conflicts of interest research and policy in biomedical research
Graham SS, Harrison KR, Edward JC, Majdik ZP, Barbour JB, Rousseau JF World Medical and Health Policy 2024 Sep 16 489-505 -
Patient Characteristics, Management, and Outcomes in a Novel Cohort of Primary Hyperparathyroidism
Sant VR, Elnakieb Y, Lehmann CU, Rousseau JF, Maalouf NM Journal of the Endocrine Society 2024 Aug 8 -
Comparing diagnostic criteria for posttraumatic stress disorder in a diverse sample of trauma-exposed youth
Dodd CG, Kirk CL, Rathouz PJ, Custer J, Garrett AS, Taylor L, Rousseau JF, Claasen C, Morgan MM, Newport DJ, Wagner KD, Nemeroff CB Journal of Traumatic Stress 2024 Aug 37 606-616 -
The role of resilience in the development of depression, anxiety, and post-traumatic stress disorder after trauma in children and adolescents
Srivastava AV, Brown R, Newport DJ, Rousseau JF, Wagner KD, Guzick A, Devargas C, Claassen C, Ugalde IT, Garrett A, Gushanas K, Liberzon I, Cisler JM, Nemeroff CB Psychiatry research 2024 Apr 334 -
Comparative effectiveness of dexamethasone in treatment of hospitalized COVID-19 patients in the United States during the first year of the pandemic: Findings from the National COVID Cohort Collaborative (N3C) data repository
Zhou R, Johnson KE, Rousseau JF, Rathouz PJ, Wilcox AB, Lee AM, Graves A, Anzalone A, Manna A, Saha A, Olex A, Zhou A, Williams AE, Southerland A, Girvin AT, Walden A, Sharathkumar AA, Amor B, Bates B, Hendricks B, Patel B, Alexander C, Bramante C, Ward-Caviness C, Madlock-Brown C, Suver C, Chute C, Dillon C, Wu C, Schmitt C, Takemoto C, Housman D, Gabriel D, Eichmann DA, Mazzotti D, Brown D, Boudreau E, Hill E, Zampino E, Carlson Marti E, Pfaff ER, French E, Koraishy FM, Mariona F, Prior F, Sokos G, Martin G, Lehmann H, Spratt H, Mehta H, Liu H, Sidky H, Hayanga JW, Pincavitch J, Clark J, Harper JR, Islam J, Ge J, Gagnier J, Saltz JH, Saltz J, Loomba J, Buse J, Mathew J, Rutter JL, McMurry JA, Guinney J, Starren J, Crowley K, Bradwell KR, Walters KM, Wilkins K, Gersing KR, Cato KD, Murray K, Kostka K, Northington L, Pyles LA, Misquitta L, Cottrell L, Portilla L, Deacy M, Bissell MM, Clark M, Emmett M, Saltz MM, Palchuk MB, Haendel MA, Adams M, Temple-O'Connor M, Kurilla MG, Morris M, Qureshi N, Safdar N, Garbarini N, Sharafeldin N, Sadan O, Francis PA, Burgoon PW, Robinson P, Payne PR, Fuentes R, Jawa R, Erwin-Cohen R, Patel R, Moffitt RA, Zhu RL, Kamaleswaran R, Hurley R, Miller RT, Pyarajan S, Michael SG, Bozzette S, Mallipattu S, Vedula S, Chapman S, O'Neil ST, Setoguchi S, Hong SS, Johnson S, Bennett TD, Callahan T, Topaloglu U, Sheikh U, Gordon V, Subbian V, Kibbe WA, Hernandez W, Beasley W, Cooper W, Hillegass W, Tanner Zhang X PloS one 2024 Mar 19 -
The risk and burden of thromboembolic and hemorrhagic events in patients with malignant gliomas receiving bevacizumab
Dasgupta P, Ou A, Lin H, Gregory T, Alfaro-Munoz KD, Yuan Y, Afshar-Khargan V, Kamiya-Matsuoka C, Rousseau JF, Majd NK Journal of Neuro-Oncology 2024 Mar 167 181-188 -
Clinical and molecular determinants of bleeding-related adverse outcomes in high-grade glioma
Dasgupta P, Rousseau JF Journal of Neuro-Oncology 2024 Feb 166 569-574 -
Evaluating traumatic event scoring schemas for their predictive value to concurrent diagnostic profiles: Texas Childhood Trauma Research Network
Aksan N, Guzick AG, Taylor L, Richmond R, Liberzon I, Cross J, Garza C, Rousseau J, Shahidullah JD, Clark SL, Rathouz PJ, Dodd CG, Cisler J, Newport DJ, Wagner KD, Nemeroff CB Journal of affective disorders 2024 Jan 345 94-102 -
Host-microbe multiomic profiling reveals age-dependent immune dysregulation associated with COVID-19 immunopathology
Author Collaboration IN, Van Phan H, Tsitsiklis A, Maguire CP, Haddad EK, Becker PM, Kim-Schulze S, Lee B, Chen J, Hoch A, Pickering H, van Zalm P, Altman MC, Augustine AD, Calfee CS, Bosinger S, Cairns CB, Eckalbar W, Guan L, Jayavelu ND, Kleinstein SH, Krammer F, Maecker HT, Ozonoff A, Peters B, Rouphael N, Montgomery RR, Reed E, Schaenman J, Steen H, Levy O, Diray-Arce J, Langelier CR, Erle DJ, Hendrickson CM, Kangelaris KN, Nguyen V, Lee D, Chak S, Ghale R, Gonzalez A, Jauregui A, Leroux C, Altamirano LT, Rashid AS, Willmore A, Woodruff PG, Krummel MF, Carrillo S, Ward A, Rousseau JF Science translational medicine 2024 16 -
Features of acute COVID-19 associated with post-acute sequelae of SARS-CoV-2 phenotypes: results from the IMPACC study
Author Collaboration IN, Author Collaboration IS, Author Collaboration C&, Author Collaboration ID, Author Collaboration IS, Author Collaboration IC, Author Collaboration IC, Ozonoff A, Jayavelu ND, Liu S, Melamed E, Milliren CE, Qi J, Geng LN, McComsey GA, Cairns CB, Baden LR, Schaenman J, Shaw AC, Samaha H, Seyfert-Margolis V, Krammer F, Rosen LB, Steen H, Syphurs C, Dandekar R, Shannon CP, Sekaly RP, Ehrlich LI, Corry DB, Kheradmand F, Atkinson MA, Brakenridge SC, Agudelo Higuita NI, Metcalf JP, Hough CL, Messer WB, Pulendran B, Nadeau KC, Davis MM, Sesma AF, Simon V, van Bakel H, Kim-Schulze S, Hafler DA, Levy O, Kraft M, Bime C, Haddad EK, Calfee CS, Erle DJ, Langelier CR, Eckalbar W, Bosinger SE, Peters B, Rousseau JF, Rogers A Nature communications 2024 Jan 15 -
Sample Size Considerations for Fine-Tuning Large Language Models for Named Entity Recognition Tasks: Methodological Study
Majdik ZP, Graham SS, Shiva Edward JC, Rodriguez SN, Karnes MS, Jensen JT, Barbour JB, Rousseau JF JMIR AI 2024 3 -
Evaluating large language models on medical evidence summarization
Tang L, Sun Z, Idnay B, Nestor JG, Soroush A, Elias PA, Xu Z, Ding Y, Durrett G, Rousseau JF, Weng C, Peng Y npj Digital Medicine 2023 Dec 6 -
Characterizing patterns of substance use in trauma exposed youth
Clark SL, Dodd CG, Taylor L, Stewart S, Yang N, Shahidullah JD, Guzick AG, Richmond R, Aksan N, Rathouz PJ, Rousseau JF, Newport DJ, Wagner KD, Nemeroff CB Journal of Psychiatric Research 2023 Nov 167 1-9 -
Relationship of Heterologous Virus Responses and Outcomes in Hospitalized COVID-19 Patients
Author Collaboration IN, Rosenberg-Hasson Y, Holmes TH, Diray-Arce J, Chen J, Kellogg R, Snyder M, Becker PM, Ozonoff A, Rouphael N, Reed EF, Maecker HT, Al Ozonoff O, Diray-Arce J, Milliren CE, McEnaney K, Barton B, Lentucci C, Saluvan M, Chang AC, Hoch A, Albert M, Shaheen T, Kho AT, Liu S, Thomas S, Chen J, Murphy MD, Cooney M, Syphurs C, Hayati AN, Bryant R, Abraham J, Schaenman J, Reed EF, Salehi-Rad R, Elashoff D, Brook J, Ramires-Sanchez E, Llamas M, Rivera A, Perdomo C, Ward DC, Magyar CE, Fulcher J, Pickering HC, Sen S, Jayavelu ND, Altman MC, Presnell S, Rousseau J Journal of Immunology 2023 Oct 211 1224-1231 -
AI-generated text may have a role in evidence-based medicine
Peng Y, Rousseau JF, Shortliffe EH, Weng C Nature medicine 2023 Jul 29 1593-1594 -
Multi-omic longitudinal study reveals immune correlates of clinical course among hospitalized COVID-19 patients
Author Collaboration IN, Diray-Arce J, Fourati S, Doni Jayavelu N, Patel R, Maguire C, Chang AC, Dandekar R, Qi J, Lee BH, van Zalm P, Schroeder A, Chen E, Konstorum A, Brito A, Gygi JP, Kho A, Chen J, Pawar S, Gonzalez-Reiche AS, Hoch A, Milliren CE, Overton JA, Westendorf K, Abraham J, Adkisson M, Albert M, Altamirano Torres L, Alvarenga B, Anderson ML, Anderson EJ, Arnett A, Asashima H, Atkinson MA, Baden LR, Barton B, Beach K, Beagle E, Becker PM, Bell MR, Bernui M, Bime C, Boddapati Kumar A, Booth LJ, Borresen B, Brakenridge SC, Bristow L, Bryant R, Calfee CS, Rogers A, Rousseau JF Cell Reports Medicine 2023 Jun 4 -
Less Likely Brainstorming: Using Language Models to Generate Alternative Hypotheses
Tang L, Peng Y, Wang Y, Ding Y, Durrett G, Rousseau JF 2023 12532-12555 -
Understanding Factual Errors in Summarization: Errors, Summarizers, Datasets, Error Detectors
Tang L, Goyal T, Fabbri AR, Laban P, Xu J, Yavuz S, Kryściński W, Rousseau JF, Durrett G 2023 11626-11644 -
A Content Analysis of Self-Reported Financial Relationships in Biomedical Research
Graham SS, Sharma N, Karnes MS, Majdik ZP, Barbour JB, Rousseau JF AJOB Empirical Bioethics 2023 14 91-98 -
Attend Who is Weak: Pruning-assisted Medical Image Localization under Sophisticated and Implicit Imbalances
Jaiswal A, Chen T, Rousseau JF, Peng Y, Ding Y, Wang Z 2023 4976-4985 -
Designing an interprofessional dementia specialty clinic: Conceptualization and evaluation of a patient-centered model
Aguirre A, Hilsabeck RC, O’Mahar K, Carberry KE, Ayers G, Bertelson J, Rousseau JF, Paydarfar D Journal of Interprofessional Care 2023 37 254-261 -
Methods for development and application of data standards in an ontology-driven information model for measuring, managing, and computing social determinants of health for individuals, households, and communities evaluated through an example of asthma
Rousseau JF, Oliveira E, Tierney WM, Khurshid A Journal of Biomedical Informatics 2022 Dec 136 -
Analytics to monitor local impact of the Protecting Access to Medicare Act's imaging clinical decision support requirements
Valtchinov VI, Murphy SN, Lacson R, Ikonomov N, Zhai BK, Andriole K, Rousseau J, Hanson D, Kohane IS, Khorasani R Journal of the American Medical Informatics Association 2022 Nov 29 1870-1878 -
Real-world opioid use among patients with migraine enrolled in US commercial insurance and risk factors associated with migraine progression
Shao Q, Rascati KL, Lawson KA, Barner JC, Sonawane KB, Rousseau JF Journal of Managed Care and Specialty Pharmacy 2022 Nov 28 1272-1281 -
Trends in Oral Anticoagulant Use Among 436 864 Patients With Atrial Fibrillation in Community Practice, 2011 to 2020
Navar AM, Kolkailah AA, Overton R, Shah NP, Rousseau JF, Flaker GC, Pignone MP, Peterson ED Journal of the American Heart Association 2022 Nov 11 -
Evidence for stratified conflicts of interest policies in research contexts: a methodological review
Graham SS, Karnes MS, Jensen JT, Sharma N, Barbour JB, Majdik ZP, Rousseau JF BMJ Open 2022 Sep 12 -
Phenotypes of disease severity in a cohort of hospitalized COVID-19 patients: Results from the IMPACC study
Author Collaboration tI, Ozonoff A, Schaenman J, Jayavelu ND, Milliren CE, Calfee CS, Cairns CB, Kraft M, Baden LR, Shaw AC, Krammer F, van Bakel H, Esserman DA, Liu S, Sesma AF, Simon V, Hafler DA, Montgomery RR, Kleinstein SH, Levy O, Bime C, Haddad EK, Erle DJ, Pulendran B, Nadeau KC, Davis MM, Hough CL, Messer WB, Higuita NI, Metcalf JP, Atkinson MA, Brakenridge SC, Corry D, Kheradmand F, Ehrlich LI, Melamed E, McComsey GA, Sekaly R, Diray-Arce J, Peters B, Augustine AD, Reed EF, Altman MC, Becker PM, Rouphael N, Bime C, McEnaney K, Barton B, Lentucci C, Saluvan M, Rousseau JF EBioMedicine 2022 Sep 83 -
Trustworthy assertion classification through prompting
Wang S, Tang L, Majety A, Rousseau JF, Shih G, Ding Y, Peng Y Journal of Biomedical Informatics 2022 Aug 132 -
Associations Between Aggregate NLP-Extracted Conflicts of Interest and Adverse Events by Drug Product
Graham SS, Majdik ZP, Barbour JB, Rousseau JF 2022 Jun 405-409 -
Healthcare utilization and costs among patients with chronic migraine, episodic migraine, and tension-type headache enrolled in commercial insurance plans
Shao Q, Rascati KL, Barner JC, Lawson KA, Sonawane KB, Rousseau JF Headache 2022 Feb 62 141-158 -
Old can be Gold: Better Gradient Flow can Make Vanilla-GCNs Great Again
Jaiswal A, Wang P, Chen T, Rousseau JF, Ding Y, Wang Z 2022 -
RoS-KD: A Robust Stochastic Knowledge Distillation Approach for Noisy Medical Imaging
Jaiswal A, Ashutosh K, Rousseau JF, Peng Y, Wang Z, Ding Y 2022 981-986 -
EchoGen: A New Benchmark Study on Generating Conclusions from Echocardiogram Notes
Tang L, Kooragayalu S, Wang Y, Ding Y, Durrett G, Rousseau JF, Peng Y 2022 359-368 -
A dashboard for exploring clinical trials sponsorship and potential virtual monopolies
Graham SS, Majdik ZP, Barbour JB, Rousseau JF JAMIA Open 2021 Oct 4 -
Letter to the editor in response to "risk prediction of delirium in hospitalized patients using machine learning: An implementation and prospective evaluation study"
Rousseau JF, Tierney WM Journal of the American Medical Informatics Association 2021 Mar 28 664-665 -
SCALP - Supervised Contrastive Learning for Cardiopulmonary Disease Classification and Localization in Chest X-rays using Patient Metadata
Jaiswal A, Li T, Zander C, Han Y, Rousseau JF, Peng Y, Ding Y 2021 1132-1137 -
RadBERT-CL: Factually-Aware Contrastive Learning For Radiology Report Classification
Jaiswal A, Tang L, Ghosh M, Rousseau JF, Peng Y, Ding Y Proceedings of Machine Learning Research 2021 158 196-206 -
Building a PubMed knowledge graph
Xu J, Kim S, Song M, Jeong M, Kim D, Kang J, Rousseau JF, Li X, Xu W, Torvik VI, Bu Y, Chen C, Ebeid IA, Li D, Ding Y Scientific Data 2020 Dec 7 -
Can emergency department provider notes help to achieve more dynamic clinical decision support?
Rousseau JF, Ip IK, Raja AS, Schuur JD, Khorasani R JACEP Open 2020 Dec 1 1269-1277 -
Understanding drug repurposing from the perspective of biomedical entities and their evolution: Bibliographic research using aspirin
Li X, Rousseau JF, Ding Y, Song M, Lu W JMIR Medical Informatics 2020 Jun 8 -
Heterogeneous Graph Embeddings of Electronic Health Records Improve Critical Care Disease Predictions
Wanyan T, Kang M, Badgeley MA, Johnson KW, De Freitas JK, Chaudhry FF, Vaid A, Zhao S, Miotto R, Nadkarni GN, Wang F, Rousseau J, Azad A, Ding Y, Glicksberg BS 2020 14-25 -
Can Automated Retrieval of Data from Emergency Department Physician Notes Enhance the Imaging Order Entry Process?
Rousseau JF, Ip IK, Raja AS, Valtchinov VI, Cochon L, Schuur JD, Khorasani R Applied Clinical Informatics 2019 10 189-198 -
Measuring and Managing Population Health
Tierney WM, Rousseau JF, Khurshid A Texas Medicine 2018 Feb 114 42-51 -
In Reply to “Erroneous Methodology in ‘Craniotomy Versus Craniectomy for Acute Traumatic Subdural Hematoma in the United States: A National Retrospective Cohort Analysis’”
Rush B, Rousseau J, Sekhon M, Griesdale DE World Neurosurgery 2016 Jul 91 652 -
Pulling it all together: Envisioning a data-driven, ideal care system
Stone D, Rousseau J, Lai Y 2016 Jan 27-42 -
Craniotomy Versus Craniectomy for Acute Traumatic Subdural Hematoma in the United States: A National Retrospective Cohort Analysis
Rush B, Rousseau J, Sekhon MS, Griesdale DE World Neurosurgery 2016 88 25-31 -
Prosodic stress: Acoustic, aphasic, aprosodic and neuroanatomic interactions
Ross ED, Shayya L, Rousseau JF Journal of Neurolinguistics 2013 Sep 26 526-551
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Machine learning models predict long COVID outcomes based on baseline clinical and immunologic factors
Justin Rousseau, M.D.
Deputy Chief Medical Informatics Officer for Neurosciences
- Neurology
Education & Training
- Medical Education - UNIVERSITY OF OKLAHOMA COLLEGE OF MEDICINE (2006-2010)
- Residency - University of California San Diego (2011-2014), Neurology
- Internship - St. Mary Medical Center (2010-2011), Internal Medicine
Books & Publications
Results: 1 Locations
Neurology Clinic - General Neurology
at James W. Aston Ambulatory Care Center 5303 Harry Hines Blvd., 8th FloorDallas, Texas 75235 214-645-8800 Directions to Neurology Clinic - General Neurology at James W. Aston Ambulatory Care Center, Dallas Parking Info for Neurology Clinic - General Neurology