Taking On America's Biggest Killer
November 9, 2018
Your risk of heart disease could be largely eliminated by mutating just one gene.
by Peter Simek
There hasn’t been a major breakthrough in the treatment of heart disease since the 1970s, when two University of Texas Southwestern Medical Center scientists discovered the low-density lipoprotein (LDL) receptor, which controls the level of cholesterol in the blood and in cells. Their discovery led to the development of statins, which are now used daily by millions of people to help reduce the effect of the accumulation of harmful fats in the circulatory system that causes heart disease.
But while the LDL discovery has had a tremendous impact on extending human life (not to mention earning the two scientists, Dr. Michael Brown and Dr. Joseph Goldstein, a Nobel Prize), what has remained elusive — perhaps constrained to the realm of medical science fiction — is an outright cure for heart disease. After all, how do you cure a condition that’s caused gradually, over a lifetime? Could it be prevented from ever forming?
At the time a young medical doctor named Helen Hobbs began working in Brown and Goldstein’s molecular genetics lab at UT Southwestern in the 1980s, the best answers doctors had for the prevention of heart disease were behavioral: Don’t smoke; watch your diet; avoid fatty foods and food containing large amounts of bad cholesterol; exercise regularly and take statins. It was not clear what role blood cholesterol levels had relative to other risk factors in the development of heart disease. This was a question that Hobbs answered.
In 2003, a geneticist in France found a genetic connection between families with high rates of heart disease and a newly identified gene called PCSK9. For Hobbs, the timing of the PCSK9 discovery was serendipitous. In 1999, she and her research partner at UT Southwestern, Dr. Jonathan Cohen, along with Dr. Ronald Victor, had launched a study to create detailed physiological profiles of 3,500 individuals living in the Dallas area in an attempt to create a searchable, sortable database of a wide variety of medical phenotypes.
When Hobbs read about PCSK9, she and Cohen guessed that they might find similar connections between heart disease and the PCSK9 gene in their study participants. But with such a small population, it was highly unlikely that they’d uncover a genetic profile in their database that would revolutionize our understanding of heart disease.
But everything about Hobbs’ path to her discovery was unlikely. And her insight proved to be wildly rewarding. She and Cohen found that 2 percent of African-Americans in Dallas had a mutation in PCSK9 that inactivated the protein, an anomaly that correlated with a markedly lower plasma cholesterol level. They discovered that this group was protected from heart disease, despite risk factors like smoking, diabetes, and hypertension. Hobbs’ research earned her the Breakthrough Prize in Life Sciences and blew open the field of cardiovascular science. The discovery paved the way for the development of a new strategy to prevent heart disease, based on this one genetic trait that Hobbs had found.
“[If you have this genetic mutation], if you have A low LDL from the time you’re born, you’re basically protected from heart disease.”
It was already something of an accident that Hobbs was in Dallas working in a genetics lab.
The Boston native attended medical school at Case Western Reserve University before interning at Columbia University Medical Center in New York City. As a young doctor passionate for clinical care, she loved the pace of the hospital; the constant challenge; the thrill of dozens of medical puzzles a day. The lab, with its slow march toward medical understanding via one grinding experiment after another, never even entered her mind as a career path.
Then Hobbs met her late husband, Dr. Dennis Stone, at NewYork-Presbyterian, where he was a resident when Hobbs was an intern. When Stone decided to continue his training at UT Southwestern, where he had been a student, Hobbs came to Texas to see if it was a place she wanted to be. Hobbs was attracted to Parkland Hospital, a large county institution connected to the University that offered her the opportunity to be surrounded by a vast number and variety of patients. At UT Southwestern, Hobbs also met the late Dr. Donald Seldin, UT Southwestern’s “intellectual father” who is largely credited not just with the rapid growth of the Dallas institution, but also for a revolutionary approach to humane medicine — and a marriage of scientific research, academic pursuit, and clinical care — that made him one of the key voices in the 21st century’s shift toward patient-driven medical practice in the U.S. Hobbs was impressed. She liked the tone Seldin set on the medical campus, one that was open and engaged, willing to take risks but also rigorously devoted to science.
“Dr. Seldin was incredibly direct,” she says. “He asked you a lot of questions. He would not let you wiggle out of answers. I really liked that and thought that it was a great way to learn medicine. Because the scariest thing about a doctor is when they don’t know what they don’t know.”
Something of Seldin’s direct style seems to have rubbed off on Hobbs. She is tall, with blond hair cropped about the chin and eyes that widen as she talks. She has an intense, infectious energy about her. She gesticulates with her hands as she talks, leaps up to dig out information from files or to pull up illustrations on the computer. Her rapid speech still belies a hint of a Boston accent, and she is quick to volunteer comments about any topic that zooms past her attention — medicine, the state of the city of Dallas, preparations for an upcoming event at the Medical School, or how to give a eulogy at a funeral.
'Thanks to Dr. Helen Hobbs, I Beat the Odds'
The discovery of PCSK9 has been a lifesaver, particularly for patients with dangerously high cholesterol. When statins didn't cut it for John, he turned to Dr. Hobbs at UT Southwestern for help.
She and Stone married in 1980, and Hobbs continued her residency at UT Southwestern. She was still planning to practice as a physician until Seldin approached her and recommended she go into a lab. Hobbs wasn’t convinced it was the right career path for her, but she respected Seldin enough to heed his advice. When she started looking for a laboratory in which to train, she floated the idea of joining an obstetrics lab that she thought was doing interesting work. Seldin wouldn’t hear it.
“Young lady, you have very bad taste,” Hobbs remembers Seldin telling her. “You should always train with the best.”
In the early 1980s, the best was the lab of Dr. Michael Brown and Dr. Joseph Goldstein, who were just a few short years away from winning their Nobel Prize. That Seldin believed Hobbs belonged in Brown and Goldstein’s lab was an honor, but after she began working there, she wasn’t immediately happy. She found the work tedious. She didn’t believe she was a very good scientist, and she feared she was losing her skills as a clinician.
“I wasn’t a natural,” she says. “It took me a long time to get in gear.”
Then Hobbs had her first taste of what it felt like to make a breakthrough, participating in a study that uncovered gene mutations that inactivated the LDL receptors — proteins that regulate the clearance of cholesterol from the blood — that led to abnormally high levels of cholesterol. She discovered individuals who had the same mutation in the gene coding for the LDL receptor.
“That was interesting, and immediately raised questions,” she says. “Why did all of these people — if they’re not related — why do they all have the same mutation in the gene?”
She discovered that all those people with the same LDL receptor mutation came from the same region in Canada, and their ancestors traced their roots back to the same small region of France.
Research for Hobbs became about more than experimental trial and error. Genetic research was an entrée into a larger story about the evolution of the human species. It was a story about the way our genetic markers are passed down through generations, expressed or isolated in cultural subgroups. And to answer the question of why any group of people displayed a certain genetic characteristic meant cracking a code that could have outsize implications for the future of human health.
The Dallas Heart Study revealed that 1 in about every 50 African-Americans had a PCSK9 mutation.
By 1999, Hobbs had established an independent laboratory at UT Southwestern, when another colleague, Dr. Sandy Williams, then the Chief of Cardiology, approached her with an idea.
The Donald W. Reynolds Foundation, a charitable organization that funded capital grants to research aging and quality of life as well as cardiovascular clinical research, was offering a decade long grant at a whopping $6 million per year to a single research center to work in cross-disciplinary cardiovascular medicine.
“At the time, I had some really exciting things happening in my lab,” Hobbs says. “I just wouldn’t have thought about [applying for the grant]. But Sandy was very ambitious.”
They had six weeks to complete the proposal. To write it, Hobbs teamed up with Victor, a hypertension specialist, and Cohen, a young South African genetic biologist. Hobbs crammed into her office with Cohen on the fifth floor of a biology building and began to bang out a proposal. They knew that the largest and most distinguished medical research facilities in the nation would be gunning for the grant, and their chances of winning it were slim. To distinguish their proposal, they would have to take advantage of the flexibility and collaborative dynamic of their relatively young medical institution.
“We thought, Well, if we’re going to do this, we have to really go for broke,” she says. “We have to write the best possible study we could think of, to ask the most important questions.”
The first key to their proposal was an emphasis on genetic diversity. Dallas has a large multiethnic population, which is attractive to geneticists since the oldest populations, and African-American populations in particular, possess the most genetic diversity. In order to increase their chances of finding mutations that might yield revelations, Hobbs and Cohen designed a study that over-sampled from the African-American sector. They designed a longitudinal study — one with the flexibility to bring subjects back repeatedly to take new tests and follow up on any new developments, and to expand the subject base by bringing in family members of the initial subjects if any interesting mutations were found.
The second was an advanced and detailed approach to epidemiology. Most genetic studies seek to capture as large a segment of the population as possible, which can be costly and can favor the number of subjects over the quality of data collected from them. Hobbs and Cohen’s proposal instead opted to direct resources toward creating the most detailed subject profiles possible.
“We decided that for everything that we measured, we would use the best, most accurate assay available,” Hobbs says. “We would have very precise phenotype traits. When we looked at the heart, we would use magnetic resonance imaging, the very best imaging modality of the heart. When we looked at fat in the liver, we didn’t use sonography, but rather another methodology called proton magnetic resonance spectroscopy that is much more accurate at measuring liver fat.”
When Hobbs decided she wanted to use an electron beam computerized tomography scanner that UT Southwestern didn’t have, she phoned the dean and asked him to commit to purchasing the million-dollar machine if they got the grant. He agreed. The final grant proposal told a compelling story of a medical institution coming together around a population-based genetic study of heart disease that would capitalize on its genetically diverse local gene pool and invest in collecting the most detailed medical assessments of any study of its kind. Hobbs and Cohen, joined by other colleagues from Dallas, flew to Las Vegas to present their proposal in the final round of considerations. They won.
“We were more surprised than anybody,” she says, “though we thought we had written a really great grant.”
Over the next three years, the team sent 50 people out into the field to knock on doors and ask questions about the family histories of random Dallas residents. They narrowed down which household member might make the best candidate for the study, and when the subjects were chosen, they underwent an array of tests. By 2003, Hobbs and Cohen and a team of other scientists at UT Southwestern had amassed a database of detailed medical profiles on a small but critical cross section of the population. They began analyzing their data by sorting their subjects into phenotypes and looking for extremes in the distribution of various traits. The first trait they looked at was high-density lipoprotein (HDL) cholesterol levels, isolating individuals with the highest and lowest HDL levels and sequencing the genes in the hope of finding shared mutations.
“We were asking whether there might be sequence variations that cause low HDL, not just in individuals with rare genetic diseases but in the general population,” Hobbs says. “And we found that it was the case. We found that healthy people were riddled with mutations.”
That’s when a team of researchers in France discovered several French families with hypercholesterolemia, a condition of extraordinarily high cholesterol, who all shared a similar genetic mutation. The French researchers isolated the gene, which produces a protein called proprotein convertase subtilisin/kexin type 9, or PCSK9. When they published their research in 2003, Hobbs wondered if she could find similar connections between PCSK9 and cholesterol in the participants in the Dallas Heart Study. If the French researchers found that a high level of PCSK9 is related to high cholesterol, Hobbs wondered, were any of the participants in the Dallas Heart Study benefiting from the opposite effect? Was there a mutated form of PCSK9 that could result in low cholesterol?
“In this case, we knew that inactivating PCSK9 would lower LDL levels. But the thing you worry about when developing a therapy is what will be the effect of inactivating a protein too much.”
After the discovery of the PCSK9 gene, several researchers were working to figure out how it affected cholesterol.
Another UT Southwestern scientist, Dr. Jay Horton, expressed the gene in the livers of mice and showed that the LDL receptors disappeared and the plasma level of LDL cholesterol increased dramatically. He concluded that expressing PCSK9 caused the cholesterol in the blood to increase. Hobbs and Cohen hypothesized that inactivating PCSK9 would have the opposite effect. To test that possibility, they sequenced the PCSK9 gene in the individuals in the Dallas Heart Study with the lowest LDL cholesterol levels to see if any had a mutation in PCSK9.
It wasn’t long before they found something interesting. Among African-Americans, the population that the study had over-sampled, the scientists found that mutations in PCSK9 were relatively common. They found that one in about every 50 African-Americans had such a mutation.
Not everyone who had the mutation had extremely low levels of LDL cholesterol, but individuals with the mutation possessed on average cholesterol levels that were 40 percent lower than the general population’s. What Hobbs and Cohen’s study had delivered was a direct correlation between the mutated PCSK9 and lower levels of LDL cholesterol. Hobbs and Cohen took this gem and used it to analyze the subjects in a similar heart study, conducted out of the University of Texas Health Science Center at Houston, that had data going back to 1987. With their collaborator in Houston, Eric Boerwinkle, they found that subjects in the Houston study with the PCSK9 mutation had dramatically lower rates of heart disease.
Dallas Heart Study
Hobbs’ team of scientists sent 50 people out to knock on doors and ask about the family histories of Dallas residents. They amassed a database of detailed medical profiles on a small but critical cross section of the population, and began isolating individuals in the hope of finding patterns. Could any of the Dallas Heart Study participants be benefiting from a mutated gene that could result in low cholesterol?
“Like an 88 percent reduction in heart disease,” Hobbs says. “So, what does that tell you? That tells you, if you have a low LDL from the time you’re born, you’re basically protected from heart disease.”
The discovery raised plenty of questions. If PCSK9 played such a significant role in how cholesterol is distributed in the body, could the mutated gene be a key to future treatments that could regulate cholesterol levels, paving a way toward drug treatment regimens that could dramatically reduce the rates of heart disease? Perhaps, but there were still a lot of unknowns. For example, if eliminating PCSK9 could reduce cholesterol levels and help prevent heart disease, would it also increase the likelihood of other health complications?
“The beauty of human genetics is that you can see directly the effect of inactivating a gene,” Hobbs says. “In this case, we knew that inactivating PCSK9 would lower LDL levels. But the thing you worry about when developing a therapy is what will be the effect of inactivating a protein too much.”
To address this potential problem, they looked for someone among their subjects who had no PCSK9 and found an aerobics instructor in her 40s. She had inherited the mutated PCSK9 gene from both parents. Her good physical and mental health was an indicator that the mutated gene did not have major adverse health effects, at least in one individual.
“Dr. Seldin was incredibly direct. He asked you a lot of questions. He would not let you wiggle out of answers. I really liked that and thought that it was a great way to learn medicine.”
Based on the findings of the Dallas Heart Study, drug companies have now developed treatments for reducing cholesterol by replicating the way the mutated PCSK9 inhibits the destruction of LDL receptors.
But adapting science that works in a test tube into clinical treatments is never simple. Because of the biochemistry behind the way PCSK9 interacts with LDL receptors, it’s unlikely such a treatment could be packaged in a pill, and attempts to do so have been abandoned. However, two companies have developed an anti-PCSK9 monoclonal antibody that can be injected; these are now approved for use by the FDA. Clinical trials show that these treatments reduce LDL cholesterol levels dramatically and also reduce heart disease. The dream for pharmaceutical researchers is a treatment that would essentially function as a new statin, the medicine developed from the discoveries by Hobbs’ mentors, Brown and Goldstein — without whom, Hobbs says unequivocally, “this would never have happened.”
“I would not be in research if I hadn’t come here to UT Southwestern,” Hobbs says. Outside Hobbs’ office is a map tracking the locations of all the participants in the Dallas Heart Study, many of whom are now scattered around the country. On the opposite wall is a world map with photographs of the dozens of doctors and scientists who have worked in her laboratory over the years. Down the hall sits the lab of Brown and Goldstein. Near this very spot was where Hobbs, Cohen, and Horton hashed out their hypothesis about PCSK9 all those years ago. Behind the doors of that nondescript stretch of hallway lies the front line in the country’s ongoing battle to cure heart disease. What lies ahead for Hobbs, as she consults for the pharmaceutical companies working to develop new medications based on her discovery, will be seen in the years to come, as the future of cardiovascular medicine unfolds from this spot.